A Resource for Human SARS-CoV-2 Polymorphism Data

Department of Forensic Sciences, University of Health Sciences, Lahore

Please cite the SARS-CoV-2 Browser as follows:
Rakha, A., Rasheed, H., Batool, Z., Akram, J., Adnan, A., & Du, J. (2020). COVID-19 Variants Database: A repository for Human SARS-CoV-2 Polymorphism Data. bioRxiv.
10416

Complete Genomes

111

Sampling Locations

82062

Total Mutations

6678

Mutating Positions

Isolates from Pakistan

7

Complete Genomes

2

Sampling Locations

100

Total Mutations

70

Mutating Positions

Primer Infopedia

Caly, Leon et al.,2020. ||forward|| 5`AAATTCTATGGTGGTTGGCACAACATGTT 3`
Caly, Leon et al.,2020. ||reverse|| 5`TAGGCATAGCTCTRTCACAYTT 3`
Caly, Leon et al.,2020. ||forward|| 5`ACAGGTACGTTAATAGTTAATAGCGT 3`
Caly, Leon et al.,2020. ||reverse|| 5`ATATTGCAGCAGTACGCACACA 3`
Cyril Chik-Yan Yip et al.,2020.||forward|| 5`ATGCATTTGCATCAGAGGCT 3`
Cyril Chik-Yan Yip et al.,2020.||reverse|| 5`TTGTTATAGCGGCCTTCTGT 3`
SIGMAALDRICH||forward|| 5`GCCTCTTCTCGTTCCTCATCAC 3`
SIGMAALDRICH||reverse|| 5`AGCAGCATCACCGCCATTG 3`
SIGMAALDRICH||forward|| 5`AGCCTCTTCTCGTTCCTCATCAC 3`
SIGMAALDRICH||reverse|| 5`CCGCCATTGCCAGCCATTC 3`
SIGMAALDRICH||forward|| 5`CCGCAAGGTTCTTCTTCGTAAG 3`
SIGMAALDRICH||reverse|| 5`TGCTATGTTTAGTGTTCCAGTTTTC 3`
SIGMAALDRICH||forward|| 5`GGCTTACCGCAAGGTTCTTC 3`
SIGMAALDRICH||forward|| 5`CAGGTATATGCGCTAGTTATCAGAC 3`
SIGMAALDRICH||reverse|| 5`CCAAGTGACATAGTGTAGGCAATG 3`
SIGMAALDRICH||forward|| 5`GCAGGTATATGCGCTAGTTATCAG 3`
SIGMAALDRICH||reverse|| 5`ACACTGGTAGAATTTCTGTGGTAAC 3`
Mohamed El-Tholotha et al., 2020.||forward|| 5`TGCTTCAGTCAGCTGATG 3`
Mohamed El-Tholotha et al., 2020.||reverse|| 5`TTAAATTGTCATCTTCGTCCTT 3`
Mohamed El-Tholotha et al., 2020.||forward|| 5`CACAATCGTTTTTAAACGGGT 3`
Mohamed El-Tholotha et al., 2020.||reverse|| 5`TCAGTACTAGTGCCTGTGCC 3`
Mohamed El-Tholotha et al., 2020.||forward|| 5`TCGTATACAGGGCTTTTGACATCTA 3`
Mohamed El-Tholotha et al., 2020.||reverse|| 5`TCTTGGAAGCGACAACAA 3`
Mohamed El-Tholotha et al., 2020.||forward|| 5`GTAGCTGGTTTTGCTAAATTCC 3`
Huijun Chen et al., 2020.||forward|| 5`CTCAGGACTTGTTCTTACCTT 3`
Huijun Chen et al., 2020.||reverse|| 5`CAAGTGCACAGTCTACAGC 3`
Jeong-Min Kim et al., 2020. ||forward|| 5`GTGARATGGTCATGTGTGGCGG 3`
Jeong-Min Kim et al., 2020. ||reverse|| 5`CARATGTTAAASACACTATTAGCATA 3`
Jeong-Min Kim et al., 2020. ||forward|| 5`ACAGGTACGTTAATAGTTAATAGCGT 3`
Jeong-Min Kim et al., 2020. ||reverse|| 5`ATATTGCAGCAGTACGCACACA 3`
Jeong-Min Kim et al., 2020. ||forward|| 5`CTCAGTCCAAGATGGTATTTCT 3`
Jeong-Min Kim et al., 2020. ||reverse|| 5`AGCACCATAGGGAAGTCC 3`
Jeong-Min Kim et al., 2020. ||forward|| 5`TCATTGTTAATGCCTATATTAACC 3`
Jeong-Min Kim et al., 2020. ||reverse|| 5`CACTTAATGTAAGGCTTTGTTAAG 3`
National Institute For Viral Disease Control and Prevention, China||forward|| 5`CCCTGTGGGTTTTACACTTAA 3`
National Institute For Viral Disease Control and Prevention, China||reverse|| 5`ACGATTGTGCATCAGCTGA 3`
National Institute For Viral Disease Control and Prevention, China||forward|| 5`GGGGAACTTCTCCTGCTAGAAT 3`
National Institute For Viral Disease Control and Prevention, China||reverse|| 5`CAGACATTTTGCTCTCAAGCTG 3`
Center for Disease Control and Prevention, USA||forward|| 5`GACCCCAAAATCAGCGAAAT 3`
Center for Disease Control and Prevention, USA||reverse|| 5`TCTGGTTACTGCCAGTTGAATCTG 3`
Center for Disease Control and Prevention, USA||forward|| 5`TTACAAACATTGGCCGCAAA 3`
Center for Disease Control and Prevention, USA||reverse|| 5`GCGCGACATTCCGAAGAA 3`
Center for Disease Control and Prevention, USA||forward|| 5`GGGAGCCTTGAATACACCAAAA 3`
Center for Disease Control and Prevention, USA||reverse|| 5`TGTAGCACGATTGCAGCATTG 3`
ROCHE [RdRP_SARSr-F2]||Forward|| 5`GTGARATGGTCATGTGTGGCGG 3`
ROCHE [RdRP_SARSr-R1] ||Reverse|| 5`CARATGTTAAASACACTATTAGCATA 3`
ROCHE [E_Sarbeco_F1]||Forward|| 5`ACAGGTACGTTAATAGTTAATAGCGT 3`
ROCHE [E_Sarbeco_R2]||Reverse|| 5`ATATTGCAGCAGTACGCACACA 3`
ROCHE [N_Sarbeco_F1]||Forward|| 5`CACATTGGCACCCGCAATC 3`
ROCHE [N_Sarbeco_R1]||Reverse|| 5`GAGGAACGAGAAGAGGCTTG 3`

Mutations Statistics

Statistics of Mutating Positions